Genome

BGI-RISe - Beijing Genomics Institute Rice Information System.

RAP-DB - Rice Annotation Project Database.

MSU-RAP - The MSU Rice Genome Annotation Project Database and Resource.

MOsDB - A resource for publicly available sequences of the rice (Oryza sativa L.) genome.

Variation

IC4R Rice Variation Database - Collected almost all the public available re-sequenced rice accessions (5152), and identified about 18M SNPs.

RMD - Rice Mutant Database.

RiceVarMap - Rice Variation Map, SNPs and indels.

SNP-Seek - This site provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa L.).

Expression

RiceFREND - Rice Functionally Related gene Expression Network Database.

RED - An integrated RNA-Seq-derived gene expression database for rice.

MCDRP - An unique manually curated database based on published experimental data.

OryGenesDB - An integrated tool for Rice reverse genetics.

OrysPSSP - Small secreted proteins from rice. (temporarily unavailable)

RiceXPro - Rice transcriptome under natural conditions.

RicePLEX - MIAME/Plant-compliant and Plant Ontology enhanced expression resources for rice.

CREP - Collection of Rice Expression Profiles.

Other

RetrOryza - The research community with the most complete resource on LTR-retrotransposon for rice.

RiceGeneThresher - A public online resource for mining genes underlying genome regionsof interest or quantitatie trait loci (QTLs) in the rice genome.

Oryza Tag Line - To organize data resulting from the phenotypic characterization of a library of T-DNA insertion lines of rice (Oryza sativa L cv. Nipponbare).

DRTF - DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica.

IC4R - Information Commons for Rice.

RiceWiki - A wiki-based database for community curation of rice genes.

IRIS - International Rice Information System.

Oryzabase - A comprehensive rice science database.

Rice Pipeline - Unification tool for rice databases. (temporarily unavailable)

RPD - Rice proteome database.

RiceGAAS - Rice genome automated annotation system.

Rice TOGO Browser - A platform to retrieve integrated information on rice functional and applied genomics.

OryzaPG-DB - Rice Proteome Database based on Shotgun Proteogenomics.