| |
Number |
Gene |
Gene Symbol |
Method of Isolation |
Chr |
Locus ID (MSU) |
MH63 ID |
ZS97 ID |
Same or not in MH63 and ZS97 |
Function |
| |
| |
1 |
Daikoku dwarf; dwarf-1; G protein alpha subunit |
D1; RGA1; d-1 |
Map based clone |
5 |
LOC_Os05g26890 |
MH05g0300100 |
ZS05g0309500 |
Same |
One third of normal height, having short thick leaves of dark green color. Internodes are thick and sometimes the second internode does not elongate. Grain is small and round |
| |
2 |
Grain number |
Gn1a; OsCKX2 |
QTL clone |
1 |
LOC_Os01g10110 |
MH01g0110400 |
ZS01g0093800 |
Same |
Cytokinin oxidase/dehydrogenase.increase the number of reproductive organs. a negative regulator of grain number. |
| |
3 |
Sword shape dwarf1 |
SSD1 |
Map based clone |
3 |
LOC_Os03g19080 |
MH12g0011800 |
ZS12g0011900 |
Same |
Leaves are sword-shaped, dark green leaves, seeds, low fertility |
| |
4 |
Rice respiratory burst oxidase homolog |
Osrboh4 |
Total RNA isolation |
5 |
LOC_Os05g38980 |
MH05g0433600 |
ZS05g0475000 |
Same |
Transient coexpression of Os Rac1 and rbohB enhanced ROS production in Nicotiana benthamiana, suggesting that direct Rac-Rboh interaction may activate NADPH oxidase activity in plants. |
| |
5 |
Small and round seed 3; Microtubule Depolymerase |
SRS3; OsKinesin-13A; sar1 |
Map based clone |
5 |
LOC_Os05g06280 |
MH05g0058200 |
ZS05g0061200 |
Collinear |
Kinesin 13 protein |
| |
6 |
Monoculm 1 |
MOC1 |
PCR clone |
6 |
LOC_Os06g40780 |
MH06g0580600 |
ZS06g0532800 |
Collinear |
Basal axillary shoot ; axillary bud ; axillary bud meristem ; axillary shoot. 03-tillering stage. Positively regulate rice tiller and Panicle branches. ortholog of lateral suppressor (LS/LAS) gene from tomato and arabidopsis. |
| |
7 |
Bacterial Blight resistance 1 |
Xa-1 |
Map based clone |
4 |
LOC_Os04g53120 |
MH04g0633700 |
ZS04g0754300 |
Divergent |
Xa1 is a member of the NBS-LRR class of plant diseaseresistance genes |
| |
8 |
Bacterial Blight resistance 21 |
Xa21; Xa-21 |
Positional clone |
11 |
LOC_Os11g35500 |
MH11g0464400 |
NA |
PAV |
Xa21 confers resistance to diverse races of Xanthomonas oryzae pv. oryzae and encodes a receptor-like kinase with leucine-rich repeats in the extra-cellular domain. |
| |
9 |
Pyricularia oryzae resistance-3 |
Pi3 |
PCR clone |
9 |
LOC_Os09g15840 |
MH04g0103600 |
ZS04g0121300 |
Collinear |
Resistant to several races of Pyricularia grisea. Pi3(t) and Pi5(t) are the same resistance gene. Original line is Pai-Kan-Tao (Japonica). The two NB-LRR genes Pi5-1 and Pi5-2 are required for rice Pi5-mediated resistance to M. oryzae |
| |
10 |
Rice blast resistance-ta |
Pita; Pi-4a |
Map based clone |
12 |
LOC_Os12g18360 |
MH12g0181700 |
ZS12g0174500 |
Nonsynonymous |
Original line (Pita) is Taducan (Indica). Original line (Pita2) is Shimokita (Japonica). |
