| |
Number |
Gene |
Gene Symbol |
Method of Isolation |
Chr |
Locus ID (MSU) |
MH63 ID |
ZS97 ID |
Same or not in MH63 and ZS97 |
Function |
| |
| |
11 |
Glutamine synthetase |
OsGS2; OsGLN2; GS31 |
gtll system |
4 |
LOC_Os04g56400 |
MH04g0666500 |
ZS04g0783400 |
Same |
Coding for glutamine synthetase polypeptides |
| |
12 |
Cytochrome P450 gene;dwarf-2;ebisu dwarf |
D2; CYP90D2 |
Map based clone |
1 |
LOC_Os01g10040 |
MH01g0109200 |
ZS01g0093000 |
Nonsynonymous |
The shape of stem and leaf resembles to d1 but the shape of spikelet is almost normal. |
| |
13 |
Heading date 1 |
Hd1 |
Map based clone |
6 |
LOC_Os06g16370 |
MH06g0213500 |
ZS06g0190400 |
Collinear |
Earliness gene through controlling photoperiod response. |
| |
14 |
Heading date-6 |
Hd6; CK2 |
QTL clone |
3 |
LOC_Os03g55389 |
MH03g0675700 |
ZS03g0710800 |
Same |
Hd6 has an epistatic effect with Hd2. This is homoeologous to wheat vernalization gene vrn-A1 on chromosome 5A. |
| |
15 |
Heading date-3 |
Hd-3 |
QTL clone |
6 |
LOC_Os06g06320 |
MH06g0077000 |
NA |
Gap |
Heading date;flowering locus T;florigen |
| |
16 |
Early heading date 1 |
Ehd1 |
QTL clone |
10 |
LOC_Os10g32600 |
MH10g0329300 |
ZS10g0360400 |
Nonsynonymous |
This gene controls basic vegetative growth period. Ef1-n which is one of the multiple alleles at Ef1 locus accelerates the heading day by 20 days earlier than the original line T65. AB092506 Dominant alleles of Ehd1 confer short-day promotion of heading. |
| |
17 |
P450dwarf 11; cytochrome P450 |
d11; CYP724B1 |
Map based clone |
4 |
LOC_Os04g39430 |
NA |
ZS04g0573100 |
Gap |
Slightly dwarf. Small and round grain. Sparse grain setting on a panicle. |
| |
18 |
Slender rice 1; GRAS-domain protein |
SLR1; OsGAI; Slr1-d |
Map based clone |
3 |
LOC_Os03g49990 |
MH03g0622400 |
ZS03g0654400 |
Same |
A constitutive GA-responsive mutant which shows a slender phenotype with elongated stem, leaf sheath, and blade similar to that of rice plants treated exogenously with GA3.This gene is the loss-of-function mutant in the SLR1 gene, which is an ortholog of |
| |
19 |
Gigantea |
OsGI |
PCR clone |
1 |
LOC_Os01g08700 |
MH01g0092800 |
ZS01g0082000 |
Same |
Bioactive GA level through the regulation of the GA-deactivating enzyme genes in rice. Consistently, osgi-1 plants showed Semi-dwarf phenotype with reduced internode and leaf sheath elongation. |
| |
21 |
Dee-geo-woo-gen dwarf |
sd1; OsGA20ox2; qSD1-2 |
Positional clone |
1 |
LOC_Os01g66100 |
NA |
ZS01g0733800 |
PAV |
Sd1-d is a dwarf gene of Taiwanese cultivar "Dee-geo-woo-gen". Dwarfness is due to low amount of active gibbelleric acid Caused by mutation of GA20ox-2 gene. Most of the useful semi-dwarfs of practical value in rice breeding have allelic Dwarfing genes at |
