Rice Information GateWay (RIGW)

Gene list

Number	Gene	Gene Symbol	Method of Isolation	Chr	Locus ID (MSU)	MH63 ID	ZS97 ID	Same or not in MH63 and ZS97	Function

114	A-Expansin	OsEXP1	EST & genomic databases of rice	4	LOC_Os04g15840	MH04g0151200	ZS04g0221900	Same	This gene controls the expansin which is a protein catalyzing long-term extension of isolated cell walls.
116	Ethylene-responsive factor transcriptional regulator	Sub1C	RT-PCR	9	LOC_Os09g11480	MH09g0168800	ZS09g0138600	Nonsynonymous	SUB1C is invariably present and acts downstream of the enhancement of GA responsiveness during submergence.
118	Ethylene-responsive factor transcriptional regulator	Sub1B	RT-PCR	9	LOC_Os09g11460	MH09g0168600	ZS09g0138500	Collinear	The haplotype at the multigenicSUBMERGENCE1 (SUB1) locus determines whether plants survive prolonged submergence. SUB1 encodes two or three transcription factors of the group VII ethylene response factor family: SUB1A, SUB1B and SUB1C.
119	Divinyl Reductase gene	OsDVR	Map based clone	3	LOC_Os03g22780	MH03g0235400	ZS03g0242600	Same	The mutant 824ys exhibited a yellow-green leaf phenotype, reduced Chl level, arrested chloroplast development, and retarded growth rate. The phenotype of the 824ys mutant was caused by a recessive mutation in a nuclear gene OsDVR on the short arm of rice
120	Rice sucrose synthase	RSUS1; SUS1;RSs2	RT-PCR	3	LOC_Os03g28330	NA	ZS03g0319500	Gap	Sus is involved in numerous and diverse growth processes in the rice plant.
121	Rice sucrose synthase	RSUS3; SUS3	RT-PCR	7	LOC_Os07g42490	MH07g0483500	ZS07g0524000	Same	SUS3 has potential roles in carbon allocation within the filling grain
123	Suppressor of Zeste;polycomb group gene	OsEMF2b; EMF2B	T-DNA	9	LOC_Os09g13630	MH09g0199700	ZS09g0160600	Same	Polycomb group protein, Suppressor of Zeste(12) homolog. a component of polycomb repression complex 2.
124	Pollen semi-sterility -1	pss-1	Map based clone	8	LOC_Os08g02380	MH08g0021200	ZS08g0022000	Same	The female gamete of mutant W207-2 was normal, and its semi-sterility was unaffected by growth duration but was conditioned by a recessive nuclear gene whose action leads to pollen semi-sterility and anther indehiscence.
125	Hybrid sterility-27	S-27	Map based clone	8	LOC_Os08g31219	MH08g0397700	ZS08g0465700	Divergent	A loss-of-function allele of F1 pollen sterility gene S27 in Oryza nivara, S27-nivs is composed of two tandem mitochondrial Ribosomal protein L27 genes (mtRPL27a and mtRPL27b), both of which are inactive.
126	Hybrid sterility-a	Sa; SaM; SaF	Map based clone	1	LOC_Os01g39680	NA	ZS01g0441600	TE-related	small ubiquitin-like modifier E3 ligase-like protein.

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