Other Links for Rice


BGI-RISe - Beijing Genomics Institute Rice Information System.
RAP-DB - Rice Annotation Project Database.
MSU-RAP - The MSU Rice Genome Annotation Project Database and Resource.
MOsDB - A resource for publicly available sequences of the rice (Oryza sativa L.) genome.


IC4R Rice Variation Database - Collected almost all the public available re-sequenced rice accessions (5152), and identified about 18M SNPs.
RMD - Rice Mutant Database.
RiceVarMap - Rice Variation Map, SNPs and indels.
SNP-Seek - This site provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa L.).


RiceFREND - Rice Functionally Related gene Expression Network Database.
RED - An integrated RNA-Seq-derived gene expression database for rice.
MCDRP - An unique manually curated database based on published experimental data.
OryGenesDB - An integrated tool for Rice reverse genetics.
OrysPSSP - Small secreted proteins from rice. (temporarily unavailable)
RiceXPro - Rice transcriptome under natural conditions.
RicePLEX - MIAME/Plant-compliant and Plant Ontology enhanced expression resources for rice.
CREP - Collection of Rice Expression Profiles.


funRiceGenes - A comprehensive database of functionally characterized rice genes.
RetrOryza - The research community with the most complete resource on LTR-retrotransposon for rice.
RiceGeneThresher - A public online resource for mining genes underlying genome regionsof interest or quantitatie trait loci (QTLs) in the rice genome.
Oryza Tag Line - To organize data resulting from the phenotypic characterization of a library of T-DNA insertion lines of rice (Oryza sativa L cv. Nipponbare).
DRTF - DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica.
IC4R - Information Commons for Rice.
RiceWiki - A wiki-based database for community curation of rice genes.
IRIS - International Rice Information System.
Oryzabase - A comprehensive rice science database.
Rice Pipeline - Unification tool for rice databases. (temporarily unavailable)
RPD - Rice proteome database.
RiceGAAS - Rice genome automated annotation system.
Rice TOGO Browser - A platform to retrieve integrated information on rice functional and applied genomics.
OryzaPG-DB - Rice Proteome Database based on Shotgun Proteogenomics.